Research Papers

PhD Thesis

David R. Powell

Algorithms for Sequence Alignment
submitted Aug 2001, accepted 2002 Thesis + errata (PDF) or Thesis + errata (postscript)

D. R. Powell, L. Allison and T. I. Dix

Fast, optimal alignment of three sequences using linear gap costs
Journal of Theoretical Biology, December, 2000, Academic Press Ltd, London, UK, Vol 207, Issue 3, ISSN: 0022-5193, pp 325-336.
D. R. Powell, L. Allison and T. I. Dix

A versatile divide and conquer technique for optimal string alignment
Information Processing Letters, Vol 70, Elsevier Science, Amsterdam, The Netherlands, ISSN: 0020-0190, May, 1999, 127-139.
L. Allison, D. Powell, T. I. Dix

Compression and approximate matching
The Computer Journal, Vol.42(1) pp.1-10, 1999.
D. R. Powell, L. Allison, T. I. Dix and D. L. Dowe

Alignment of low information sequences
in X Lin (ed) Australian Computer Science Communications, Computing Theory '98, Proceedings of the Fourth Australasian Theory Symposium (CATS '98) Perth, Australia, 2-3 February 1998, Springer-Verlag, Singapore, ISBN: 98103083-92-1, 20: 3: 215-229.
D. R. Powell, D. L. Dowe, L. Allison and T. I. Dix

Discovering simple DNA sequences by compression
Pacific Symposium on Biocomputing '98, World Scientific Publishing, Singapore, 597-608, 12pp.

Yvan Strahm, David Powell and Christophe Lefèvre

EST-PAC a web package for EST annotation and protein sequence prediction
Source Code Biol Med. 2006 Oct 12;1:2
M. Lo, D. M. Bulach, D. R. Powell, D. A. Haake, J. Matsunaga, M. L. Paustian, R. L. Zuerner, and B. Adler

Effects of Temperature on Gene Expression Patterns in Leptospira interrogans Serovar Lai as Assessed by Whole-Genome Microarrays
Infect. Immun., October 1, 2006; 74(10): 5848 - 5859.
Jennifer R. O'Connor, Dena Lyras, Kylie A. Farrow, Vicki Adams, David R. Powell, Jason Hinds, Jackie K. Cheung andJulian I. Rood

Construction and analysis of chromosomal Clostridium difficile mutants
Molecular Microbiology, Volume 61 Page 1335 - September 2006,
Ishara C. Gunesekere Charlene M. Kahler, David R. Powell, Lori A. S. Snyder, Nigel J. Saunders, Julian I. Rood, and John K. Davies

Comparison of the RpoH-Dependent Regulon and General Stress Response in Neisseria gonorrhoeae
Journal of Bacteriology, July 2006, p. 4769-4776, Vol. 188, No. 13
L.G. Matsoso, B.D. Kana, P.K. Crellin, D. Lea-Smith, A. Peolis, D. Powell, S.S. Dawes, H. Rubin, R.L. Coppel, V. Mizrahi

Function of the cytochrome bc1-aa3 branch of the respiratory network in mycobacteria and network adaptation occurring in response to its disruption.
Journal of Bacteriology, 2005, 187:6300-6307.